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Version: v0.0.13

Tolerance & the warning model

Real scanners and archives emit objects that deviate from the letter of the standard in documented, recoverable ways: odd-length values with no padding, a missing preamble, an off-spec VR, a group-length that disagrees with reality. @cosyte/dicom follows Postel's Law: the parser is liberal (it recovers and records a stable-coded warning), and the serializer is conservative (it always emits spec-clean Part 10). A recoverable quirk is never a silent change and never a throw.

Two tiers plus a small fatal set

  • Recoverable deviations → a warning. The parser recovers, keeps the data, and appends a DicomParseWarning to ds.warnings carrying a stable code and the byte offset where it occurred. There are 25 such codes today (e.g. DICOM_ODD_LENGTH_VALUE_PADDED, DICOM_MISSING_PREAMBLE, DICOM_VR_MISMATCH, DICOM_FILE_META_GROUP_LENGTH_MISMATCH).
  • Unrecoverable structural corruption → a throw. Only four Tier-3 conditions throw a typed DicomParseError: NOT_DICOM_PART_10, INVALID_FILE_META, UNSUPPORTED_TRANSFER_SYNTAX, and EMPTY_INPUT. Everything short of "these bytes are not a readable Part 10 object" is a warning.
import { parseDicom, WARNING_CODES } from "@cosyte/dicom";

// Synthetic object with the 128-byte preamble omitted: a recoverable quirk.
const buf = Buffer.from(
"AgAAAFVMBAAcAAAAAgAQAFVJFAAxLjIuODQwLjEwMDA4LjEuMi4xAAgAYABDUwIAQ1QQACAATE8GAE1STi00Mg==",
"base64",
);

const ds = parseDicom(buf);

// It parsed. The data is intact...
ds.series.modality; // => "CT"
ds.patient.id; // => "MRN-42"

// ...and the deviation is recorded, not hidden.
ds.warnings.map((w) => w.code); // => ["DICOM_MISSING_PREAMBLE"]
ds.warnings[0]?.code === WARNING_CODES.DICOM_MISSING_PREAMBLE; // => true
typeof ds.warnings[0]?.position?.byteOffset; // => "number"

Fatal input throws a typed error

An unreadable object throws DicomParseError, whose .code is one of the four fatal codes. Narrow on it with err instanceof DicomParseError:

import { parseDicom, DicomParseError, FATAL_CODES } from "@cosyte/dicom";

let code: string | undefined;
try {
parseDicom(Buffer.alloc(0)); // no bytes at all
} catch (err) {
if (err instanceof DicomParseError) code = err.code;
}

code; // => "EMPTY_INPUT"
code === FATAL_CODES.EMPTY_INPUT; // => true

What a diagnostic carries, and what it does not

A Tier-2 warning's message is not composed from the document. It is looked up in a frozen registry keyed by the warning code, and the only substitutions are structural: a tag this parser composed from the element header's four bytes, a VR checked against the closed 34-VR set, and input-derived numbers (a declared length, a byte count, a value index). No factory takes a string read out of the file, so a value cannot be interpolated even by a future call site that tries. A token that fails its check renders as <withheld> rather than being echoed.

So w.code and w.position are safe to log. w.message is safe on every well-formed file and is not unconditionally safe, and the difference is one shape. The registry's {tag} slot is filled by renderTag, which validates a tag's shape and therefore cannot refuse one that a length field's lie composed out of somebody's value. Measured: a (0008,4000) ST carrying "MR BRAIN SMITHSON " whose Value Length under-declares by 12 desynchronizes the reader onto a fabricated header at an odd group, and DICOM_PRIVATE_TAG_NO_CREATOR names it 4E495320 - "IN S", four bytes of the payload, in wire order. PRE-EXISTING on every release that has this code. It is disclosed rather than guarded because withholding the tag there would take it off every private element in every conformant file, which costs the diagnostic its whole purpose to close a shape only a crafted file produces; that is a product decision, not a defect fix. The same is true of report.removedPrivateTags and of report.embeddedAttributes[].hidden. If you log warning messages from untrusted files verbatim, treat a tag in one as document-derived.

A Tier-3 fatal's message is bounded the same way, and it was not always. Every message parseDicom throws now comes from a second frozen registry, keyed by the structural reason for the refusal rather than by the fatal code (the four codes are locked, and several of them are raised for more than one reason). Until this release four of those messages were assembled at the throw site out of template literals and printed the element's tag, its declared length, or both. That reads as harmless and is not: a fatal like "this element's Value Length reaches past the end of the buffer" fires precisely when a length field is lying, which is what makes the reader read bytes inside somebody's value as a Data Element header. Measured on a synthetic "MR BRAIN SMITHSON ", one such message printed Element 41524E49 declared length=1330858068: that is "RAIN" followed by "THSO", eight consecutive bytes of the payload in two fields, each recoverable with a single typed read.

The bound is the same one the Tier-2 registry uses, and it is structural rather than a discipline: the factory signatures take no tag and no wire-length parameter at all, so there is no slot for one to travel through. position.byteOffset identifies the element instead. What a fatal message can still carry is named one entry at a time: a VR checked against the closed 34-VR set, a byte count bounded by the buffer being read, a library constant, PS3.6's registry name for an unsupported Transfer Syntax UID, and a zlib error code checked against zlib's own nine-name table.

A DicomParseError is still different from a warning, and this is the one to read carefully. It carries a snippet: up to 16 bytes of the source rendered as hex, attached so a structural failure is debuggable. Those are raw input bytes. On a real clinical file they can be part of a patient name or an identifier, and the library does not redact them. Log err.code, err.byteOffset and err.message; treat err.snippet as PHI and redact it at your own boundary if your compliance posture requires it. (The one exception is deliberate: for UNSUPPORTED_TRANSFER_SYNTAX the snippet slot carries the dictionary's name for the UID when PS3.6 publishes one, which is a constant, not input.)

The snippet is now cut in the same frame its byteOffset is counted in. It was not: the offset moved with the frame (file-absolute at the root, relative to the enclosing slice inside a defined-length Sequence or Item, into the inflated stream under Deflated Explicit VR LE) while the cut was always taken from the whole file, so a { strict: true } escalation raised inside a defined-length Item returned the 16 bytes sitting at that item-relative number measured from byte 0 of the file. That is a diagnostic handing back part of an element the reader was never asked about. Fixed. It does not make the snippet safe: the bytes are still raw source bytes, and the fix makes them more certainly the element's own content, not less.

The model fields that are bounded, and the ones that are values

A downstream package that reads this model and builds its own diagnostics from it needs to know which strings are identifiers this parser composed and which are bytes the sender wrote. These are identifiers, with the bound each one actually has. One of them is a length rather than a membership test, and its row says so. And contextPath has no bound at all - it was listed here as structural until it was measured, and it now has its own row saying what it really is. It is not the only entry read off the wire (removedPrivateTags and UnauditableSequenceFinding.tag are too, and are disclosed as such in Troubleshooting); it is the one that was described as though it were not:

FieldBound
Element.tagComposed here: eight uppercase hex digits from the header's four bytes.
Element.vrTwo bytes, taken from the wire as-is. Checked against the closed 34-VR set only where a message renders it, so a non-conformant sender's two bytes do reach this field (Postel's Law: the on-wire VR is trusted). Two bytes is a hard length bound, not a membership one.
Element.privateCreatorThe active Profile's private dictionary must name it, or it reads <withheld>. With no profile, nothing is recognized. It is populated only from a block reservation made in the element's own Data Set, so it is undefined on a private element in a Sequence Item that claimed no block.
Element.specificCharacterSetPS3.3's closed defined-term table must name it, or it reads <withheld>. The exported parseSpecificCharacterSet bounds its results the same way.
FileMeta.transferSyntaxUIDOne of exactly four literals: any other value is a fatal, so no parsed dataset carries one.
FileMetaRawElement.tag / .vrAs above.
DeidentifiedAttribute.tag / .keyword / .action / .applied / .repeatingGroupComposed from the Part 6 and Annex E tables. tag is bound to a tag those tables carry a row for, which is membership in a closed table; an attribute Annex E has no row for is not audited here at all.
DeidentifyReport.removedPrivateTags / .retainedTags, and the option names you passed in.
contextPath, on DeidentifiedAttribute and on all three findings that carry oneUnbounded, and this row is the correction. A segment is TAG[index]; the tag half is whatever tag the descent walked, read off the wire, with neither a shape test nor a closed table behind it. On a file whose under-declared Value Length desynchronized the reader onto four bytes inside somebody's value, those four bytes are published here. Measured: a LO carrier holding MRS BRAIN SMITHSON yields contextPath: ["53484E4F[0]"], which is HSON in wire order, with no warning and every finding array empty. Treat it as PHI when the source is untrusted.
EmbeddedAttributeFinding.tag / .vr / .hiddenComposed. hidden holds tags this parser built from four bytes each, and the bytes were sitting inside a value - so they are re-composed as Tag here, never echoed.
UnauditableSequenceFinding.tag / .byteLengthComposed, plus one input-derived number: byteLength is the size of the value that was dropped, never any of its bytes.

Everything else on the model is a value, and carries whatever the file carried: Element.rawBytes, Element.value, FileMeta.mediaStorageSOPClassUID, .mediaStorageSOPInstanceUID, .implementationClassUID, .implementationVersionName, .sourceApplicationEntityTitle, .fileMetaInformationVersion, FileMetaRawElement.value, and the keys of DeidentifyReport.uidMap (the source UIDs, kept so replacement stays consistent across a study). Treat those as PHI. They are what the parser is for.

See Troubleshooting for the full symptom table and the logging posture.

Escalate when you want strictness

The tolerance posture is not fixed. A source profile can escalate chosen warning codes to a thrown error (a stricter gate for a trusted sender) or suppress benign, high-volume codes for a known-quirky source, without ever loosening a correct decode. The built-in profiles.strict and profiles.lenient are the two ends of that dial.